Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/MusDelB_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  218,973,801
 Normal Paired: 191,432,284 (87.42%)
 Chimeric Paired: 23,865,175 (10.90%)
 Chimeric Ambiguous: 3,095,171 (1.41%)
 Unmapped: 581,171 (0.27%)
 Ligation Motif Present: 37,053 (0.02%)
Alignable (Normal+Chimeric Paired): 215,297,459 (98.32%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/MusDelB_Mut/aligned inter.txt
Intra-fragment Reads: 30,730,658 (14.03% / 52.86%)
Below MAPQ Threshold: 4,604,857 (2.10% / 7.92%)
Hi-C Contacts: 22,798,296 (10.41% / 39.22%)
 Ligation Motif Present: 12,427  (0.01% / 0.02%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 27% - 25% - 25% - 23%
Inter-chromosomal: 3,848,199  (1.76% / 6.62%)
Intra-chromosomal: 18,950,097  (8.65% / 32.60%)
Short Range (<20Kb): 11,248,747  (5.14% / 19.35%)
Long Range (>20Kb): 7,701,345  (3.52% / 13.25%)