Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/InvF_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  178,785,687
 Normal Paired: 155,491,034 (86.97%)
 Chimeric Paired: 20,239,731 (11.32%)
 Chimeric Ambiguous: 2,651,183 (1.48%)
 Unmapped: 403,739 (0.23%)
 Ligation Motif Present: 28,171 (0.02%)
Alignable (Normal+Chimeric Paired): 175,730,765 (98.29%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/InvF_Mut/aligned inter.txt
Intra-fragment Reads: 31,444,008 (17.59% / 53.13%)
Below MAPQ Threshold: 4,083,062 (2.28% / 6.90%)
Hi-C Contacts: 23,651,840 (13.23% / 39.97%)
 Ligation Motif Present: 11,635  (0.01% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 28% - 25% - 25% - 23%
Inter-chromosomal: 4,052,691  (2.27% / 6.85%)
Intra-chromosomal: 19,599,149  (10.96% / 33.12%)
Short Range (<20Kb): 11,658,843  (6.52% / 19.70%)
Long Range (>20Kb): 7,940,291  (4.44% / 13.42%)