Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/FL_Inv1-Mm_WT -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  423,406,900
 Normal Paired: 404,678,576 (95.58%)
 Chimeric Paired: 12,037,453 (2.84%)
 Chimeric Ambiguous: 1,608,475 (0.38%)
 Unmapped: 5,082,396 (1.20%)
 Ligation Motif Present: 160,032 (0.04%)
Alignable (Normal+Chimeric Paired): 416,716,029 (98.42%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/FL_Inv1-Mm_WT/aligned inter.txt
Intra-fragment Reads: 50,214,843 (11.86% / 48.76%)
Below MAPQ Threshold: 21,032,331 (4.97% / 20.42%)
Hi-C Contacts: 31,731,918 (7.49% / 30.81%)
 Ligation Motif Present: 26,633  (0.01% / 0.03%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 6,258,303  (1.48% / 6.08%)
Intra-chromosomal: 25,473,615  (6.02% / 24.74%)
Short Range (<20Kb): 17,841,037  (4.21% / 17.32%)
Long Range (>20Kb): 7,632,390  (1.80% / 7.41%)