Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/ZRSreg_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  119,517,354
 Normal Paired: 113,087,966 (94.62%)
 Chimeric Paired: 4,713,405 (3.94%)
 Chimeric Ambiguous: 1,202,361 (1.01%)
 Unmapped: 513,622 (0.43%)
 Ligation Motif Present: 26,427 (0.02%)
Alignable (Normal+Chimeric Paired): 117,801,371 (98.56%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/ZRSreg_Mut/aligned inter.txt
Intra-fragment Reads: 14,590,706 (12.21% / 43.89%)
Below MAPQ Threshold: 8,569,605 (7.17% / 25.78%)
Hi-C Contacts: 10,084,095 (8.44% / 30.33%)
 Ligation Motif Present: 9,533  (0.01% / 0.03%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,578,456  (1.32% / 4.75%)
Intra-chromosomal: 8,505,639  (7.12% / 25.59%)
Short Range (<20Kb): 5,091,513  (4.26% / 15.32%)
Long Range (>20Kb): 3,414,105  (2.86% / 10.27%)