Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/del1-13d9lac_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  123,990,178
 Normal Paired: 102,915,713 (83.00%)
 Chimeric Paired: 4,622 (0.00%)
 Chimeric Ambiguous: 9,432 (0.01%)
 Unmapped: 21,060,411 (16.99%)
 Ligation Motif Present: 15,970 (0.01%)
Alignable (Normal+Chimeric Paired): 102,920,335 (83.01%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/del1-13d9lac_Mut/aligned inter.txt
Intra-fragment Reads: 12,257,086 (9.89% / 13.86%)
Below MAPQ Threshold: 17,047,534 (13.75% / 19.28%)
Hi-C Contacts: 59,135,215 (47.69% / 66.86%)
 Ligation Motif Present: 9,628  (0.01% / 0.01%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,891,261  (10.40% / 14.58%)
Intra-chromosomal: 46,243,954  (37.30% / 52.29%)
Short Range (<20Kb): 10,239,573  (8.26% / 11.58%)
Long Range (>20Kb): 36,004,348  (29.04% / 40.71%)