Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/del1-13d9lac_WT -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  118,044,334
 Normal Paired: 97,923,711 (82.96%)
 Chimeric Paired: 4,897 (0.00%)
 Chimeric Ambiguous: 9,029 (0.01%)
 Unmapped: 20,106,697 (17.03%)
 Ligation Motif Present: 15,533 (0.01%)
Alignable (Normal+Chimeric Paired): 97,928,608 (82.96%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/del1-13d9lac_WT/aligned inter.txt
Intra-fragment Reads: 11,956,875 (10.13% / 14.37%)
Below MAPQ Threshold: 15,879,724 (13.45% / 19.08%)
Hi-C Contacts: 55,372,020 (46.91% / 66.55%)
 Ligation Motif Present: 9,161  (0.01% / 0.01%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,729,610  (9.94% / 14.10%)
Intra-chromosomal: 43,642,410  (36.97% / 52.45%)
Short Range (<20Kb): 9,998,980  (8.47% / 12.02%)
Long Range (>20Kb): 33,643,388  (28.50% / 40.43%)