Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/delattP-Rel5d9lac_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  130,407,222
 Normal Paired: 108,377,303 (83.11%)
 Chimeric Paired: 4,246 (0.00%)
 Chimeric Ambiguous: 8,690 (0.01%)
 Unmapped: 22,016,983 (16.88%)
 Ligation Motif Present: 16,951 (0.01%)
Alignable (Normal+Chimeric Paired): 108,381,549 (83.11%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/delattP-Rel5d9lac_Mut/aligned inter.txt
Intra-fragment Reads: 13,161,094 (10.09% / 14.24%)
Below MAPQ Threshold: 17,912,247 (13.74% / 19.38%)
Hi-C Contacts: 61,352,365 (47.05% / 66.38%)
 Ligation Motif Present: 10,071  (0.01% / 0.01%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,721,085  (9.75% / 13.76%)
Intra-chromosomal: 48,631,280  (37.29% / 52.62%)
Short Range (<20Kb): 10,775,869  (8.26% / 11.66%)
Long Range (>20Kb): 37,855,376  (29.03% / 40.96%)