Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/delattP-Rel5d9lac_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  105,751,413
 Normal Paired: 88,160,979 (83.37%)
 Chimeric Paired: 3,507 (0.00%)
 Chimeric Ambiguous: 7,196 (0.01%)
 Unmapped: 17,579,731 (16.62%)
 Ligation Motif Present: 13,881 (0.01%)
Alignable (Normal+Chimeric Paired): 88,164,486 (83.37%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/delattP-Rel5d9lac_Mut/aligned inter.txt
Intra-fragment Reads: 10,705,848 (10.12% / 13.89%)
Below MAPQ Threshold: 14,470,215 (13.68% / 18.77%)
Hi-C Contacts: 51,902,487 (49.08% / 67.34%)
 Ligation Motif Present: 8,543  (0.01% / 0.01%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,494,609  (9.92% / 13.62%)
Intra-chromosomal: 41,407,878  (39.16% / 53.72%)
Short Range (<20Kb): 9,143,138  (8.65% / 11.86%)
Long Range (>20Kb): 32,264,692  (30.51% / 41.86%)