Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/i4i5_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  254,619,950
 Normal Paired: 247,264,785 (97.11%)
 Chimeric Paired: 2,066,565 (0.81%)
 Chimeric Ambiguous: 499,533 (0.20%)
 Unmapped: 4,789,067 (1.88%)
 Ligation Motif Present: 46,904 (0.02%)
Alignable (Normal+Chimeric Paired): 249,331,350 (97.92%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/i4i5_Mut/aligned inter.txt
Intra-fragment Reads: 48,554,801 (19.07% / 49.93%)
Below MAPQ Threshold: 27,191,716 (10.68% / 27.96%)
Hi-C Contacts: 21,490,753 (8.44% / 22.10%)
 Ligation Motif Present: 12,678  (0.00% / 0.01%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,450,186  (2.14% / 5.61%)
Intra-chromosomal: 16,040,567  (6.30% / 16.50%)
Short Range (<20Kb): 10,926,931  (4.29% / 11.24%)
Long Range (>20Kb): 5,113,575  (2.01% / 5.26%)