Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/mbi4i5ZRS_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  206,575,411
 Normal Paired: 194,590,808 (94.20%)
 Chimeric Paired: 7,903,868 (3.83%)
 Chimeric Ambiguous: 3,122,719 (1.51%)
 Unmapped: 958,016 (0.46%)
 Ligation Motif Present: 67,508 (0.03%)
Alignable (Normal+Chimeric Paired): 202,494,676 (98.02%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/mbi4i5ZRS_Mut/aligned inter.txt
Intra-fragment Reads: 46,137,672 (22.33% / 47.36%)
Below MAPQ Threshold: 20,843,004 (10.09% / 21.39%)
Hi-C Contacts: 30,440,039 (14.74% / 31.25%)
 Ligation Motif Present: 18,629  (0.01% / 0.02%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,653,188  (2.25% / 4.78%)
Intra-chromosomal: 25,786,851  (12.48% / 26.47%)
Short Range (<20Kb): 17,098,205  (8.28% / 17.55%)
Long Range (>20Kb): 8,688,557  (4.21% / 8.92%)