Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/mbi4i5ZRS_WT -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  380,545,488
 Normal Paired: 372,835,990 (97.97%)
 Chimeric Paired: 17,411 (0.00%)
 Chimeric Ambiguous: 19,879 (0.01%)
 Unmapped: 7,672,208 (2.02%)
 Ligation Motif Present: 47,287 (0.01%)
Alignable (Normal+Chimeric Paired): 372,853,401 (97.98%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/mbi4i5ZRS_WT/aligned inter.txt
Intra-fragment Reads: 90,606,822 (23.81% / 52.55%)
Below MAPQ Threshold: 43,134,896 (11.34% / 25.02%)
Hi-C Contacts: 38,677,516 (10.16% / 22.43%)
 Ligation Motif Present: 18,243  (0.00% / 0.01%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,147,868  (2.14% / 4.73%)
Intra-chromosomal: 30,529,648  (8.02% / 17.71%)
Short Range (<20Kb): 20,370,865  (5.35% / 11.81%)
Long Range (>20Kb): 10,158,669  (2.67% / 5.89%)