Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/i4i5ZRSreg_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  167,238,859
 Normal Paired: 158,803,575 (94.96%)
 Chimeric Paired: 6,360,528 (3.80%)
 Chimeric Ambiguous: 1,414,278 (0.85%)
 Unmapped: 660,478 (0.39%)
 Ligation Motif Present: 25,076 (0.01%)
Alignable (Normal+Chimeric Paired): 165,164,103 (98.76%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/i4i5ZRSreg_Mut/aligned inter.txt
Intra-fragment Reads: 21,617,182 (12.93% / 44.89%)
Below MAPQ Threshold: 10,120,925 (6.05% / 21.02%)
Hi-C Contacts: 16,419,066 (9.82% / 34.09%)
 Ligation Motif Present: 7,936  (0.00% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,894,354  (1.73% / 6.01%)
Intra-chromosomal: 13,524,712  (8.09% / 28.08%)
Short Range (<20Kb): 7,439,590  (4.45% / 15.45%)
Long Range (>20Kb): 6,085,025  (3.64% / 12.64%)