Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Dup-C_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  136,633,538
 Normal Paired: 129,849,113 (95.03%)
 Chimeric Paired: 5,017,330 (3.67%)
 Chimeric Ambiguous: 368,493 (0.27%)
 Unmapped: 1,398,602 (1.02%)
 Ligation Motif Present: 27,653 (0.02%)
Alignable (Normal+Chimeric Paired): 134,866,443 (98.71%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Dup-C_Mut/aligned inter.txt
Intra-fragment Reads: 19,690,797 (14.41% / 55.73%)
Below MAPQ Threshold: 2,969,089 (2.17% / 8.40%)
Hi-C Contacts: 12,670,576 (9.27% / 35.86%)
 Ligation Motif Present: 8,701  (0.01% / 0.02%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 26% - 24% - 24% - 25%
Inter-chromosomal: 1,984,369  (1.45% / 5.62%)
Intra-chromosomal: 10,686,207  (7.82% / 30.25%)
Short Range (<20Kb): 6,918,222  (5.06% / 19.58%)
Long Range (>20Kb): 3,767,976  (2.76% / 10.66%)