Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Dup-L_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  193,861,070
 Normal Paired: 169,083,431 (87.22%)
 Chimeric Paired: 22,090,505 (11.40%)
 Chimeric Ambiguous: 2,266,847 (1.17%)
 Unmapped: 420,287 (0.22%)
 Ligation Motif Present: 52,802 (0.03%)
Alignable (Normal+Chimeric Paired): 191,173,936 (98.61%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Dup-L_Mut/aligned inter.txt
Intra-fragment Reads: 28,334,149 (14.62% / 50.28%)
Below MAPQ Threshold: 3,286,421 (1.70% / 5.83%)
Hi-C Contacts: 24,733,745 (12.76% / 43.89%)
 Ligation Motif Present: 17,890  (0.01% / 0.03%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 27% - 25% - 24% - 24%
Inter-chromosomal: 4,681,096  (2.41% / 8.31%)
Intra-chromosomal: 20,052,649  (10.34% / 35.58%)
Short Range (<20Kb): 11,060,705  (5.71% / 19.63%)
Long Range (>20Kb): 8,991,931  (4.64% / 15.96%)