Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Dup-S_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  119,721,308
 Normal Paired: 117,674,500 (98.29%)
 Chimeric Paired: 4,647 (0.00%)
 Chimeric Ambiguous: 2,281 (0.00%)
 Unmapped: 2,039,880 (1.70%)
 Ligation Motif Present: 27,370 (0.02%)
Alignable (Normal+Chimeric Paired): 117,679,147 (98.29%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Dup-S_Mut/aligned inter.txt
Intra-fragment Reads: 23,354,193 (19.51% / 48.91%)
Below MAPQ Threshold: 5,946,228 (4.97% / 12.45%)
Hi-C Contacts: 18,447,579 (15.41% / 38.64%)
 Ligation Motif Present: 9,657  (0.01% / 0.02%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 26% - 24% - 24% - 26%
Inter-chromosomal: 3,605,925  (3.01% / 7.55%)
Intra-chromosomal: 14,841,654  (12.40% / 31.08%)
Short Range (<20Kb): 9,032,138  (7.54% / 18.92%)
Long Range (>20Kb): 5,809,445  (4.85% / 12.17%)