Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/FL_Inv1-Mm_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  197,078,733
 Normal Paired: 187,090,587 (94.93%)
 Chimeric Paired: 7,356,150 (3.73%)
 Chimeric Ambiguous: 793,191 (0.40%)
 Unmapped: 1,838,805 (0.93%)
 Ligation Motif Present: 55,532 (0.03%)
Alignable (Normal+Chimeric Paired): 194,446,737 (98.66%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/FL_Inv1-Mm_Mut/aligned inter.txt
Intra-fragment Reads: 23,164,613 (11.75% / 47.32%)
Below MAPQ Threshold: 8,137,714 (4.13% / 16.63%)
Hi-C Contacts: 17,645,698 (8.95% / 36.05%)
 Ligation Motif Present: 10,052  (0.01% / 0.02%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,610,605  (2.34% / 9.42%)
Intra-chromosomal: 13,035,093  (6.61% / 26.63%)
Short Range (<20Kb): 8,910,118  (4.52% / 18.20%)
Long Range (>20Kb): 4,124,910  (2.09% / 8.43%)