Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv1_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  142,489,638
 Normal Paired: 140,250,378 (98.43%)
 Chimeric Paired: 5,204 (0.00%)
 Chimeric Ambiguous: 1,507 (0.00%)
 Unmapped: 2,232,549 (1.57%)
 Ligation Motif Present: 12,809 (0.01%)
Alignable (Normal+Chimeric Paired): 140,255,582 (98.43%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv1_Mut/aligned inter.txt
Intra-fragment Reads: 24,161,858 (16.96% / 56.58%)
Below MAPQ Threshold: 4,816,124 (3.38% / 11.28%)
Hi-C Contacts: 13,723,925 (9.63% / 32.14%)
 Ligation Motif Present: 4,674  (0.00% / 0.01%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 1,635,456  (1.15% / 3.83%)
Intra-chromosomal: 12,088,469  (8.48% / 28.31%)
Short Range (<20Kb): 7,806,152  (5.48% / 18.28%)
Long Range (>20Kb): 4,282,288  (3.01% / 10.03%)