Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv1d_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  111,559,691
 Normal Paired: 109,669,972 (98.31%)
 Chimeric Paired: 10,206 (0.01%)
 Chimeric Ambiguous: 4,265 (0.00%)
 Unmapped: 1,875,248 (1.68%)
 Ligation Motif Present: 14,396 (0.01%)
Alignable (Normal+Chimeric Paired): 109,680,178 (98.32%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv1d_Mut/aligned inter.txt
Intra-fragment Reads: 24,146,164 (21.64% / 52.70%)
Below MAPQ Threshold: 6,121,583 (5.49% / 13.36%)
Hi-C Contacts: 15,550,179 (13.94% / 33.94%)
 Ligation Motif Present: 6,216  (0.01% / 0.01%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 24% - 25% - 26%
Inter-chromosomal: 2,091,963  (1.88% / 4.57%)
Intra-chromosomal: 13,458,216  (12.06% / 29.37%)
Short Range (<20Kb): 8,614,389  (7.72% / 18.80%)
Long Range (>20Kb): 4,843,802  (4.34% / 10.57%)