Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv2_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  135,846,503
 Normal Paired: 133,544,704 (98.31%)
 Chimeric Paired: 5,343 (0.00%)
 Chimeric Ambiguous: 1,596 (0.00%)
 Unmapped: 2,294,860 (1.69%)
 Ligation Motif Present: 11,935 (0.01%)
Alignable (Normal+Chimeric Paired): 133,550,047 (98.31%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv2_Mut/aligned inter.txt
Intra-fragment Reads: 22,984,096 (16.92% / 55.86%)
Below MAPQ Threshold: 4,667,914 (3.44% / 11.34%)
Hi-C Contacts: 13,496,243 (9.93% / 32.80%)
 Ligation Motif Present: 4,392  (0.00% / 0.01%)
 3' Bias (Long Range): 83% - 17%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 1,870,466  (1.38% / 4.55%)
Intra-chromosomal: 11,625,777  (8.56% / 28.25%)
Short Range (<20Kb): 6,833,971  (5.03% / 16.61%)
Long Range (>20Kb): 4,791,771  (3.53% / 11.65%)