Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv3_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  136,828,693
 Normal Paired: 134,498,297 (98.30%)
 Chimeric Paired: 5,466 (0.00%)
 Chimeric Ambiguous: 1,951 (0.00%)
 Unmapped: 2,322,979 (1.70%)
 Ligation Motif Present: 12,012 (0.01%)
Alignable (Normal+Chimeric Paired): 134,503,763 (98.30%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv3_Mut/aligned inter.txt
Intra-fragment Reads: 25,481,911 (18.62% / 57.33%)
Below MAPQ Threshold: 5,307,181 (3.88% / 11.94%)
Hi-C Contacts: 13,655,980 (9.98% / 30.73%)
 Ligation Motif Present: 4,657  (0.00% / 0.01%)
 3' Bias (Long Range): 84% - 16%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,893,979  (1.38% / 4.26%)
Intra-chromosomal: 11,762,001  (8.60% / 26.46%)
Short Range (<20Kb): 7,303,575  (5.34% / 16.43%)
Long Range (>20Kb): 4,458,389  (3.26% / 10.03%)