Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv4_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  130,337,011
 Normal Paired: 128,172,565 (98.34%)
 Chimeric Paired: 5,255 (0.00%)
 Chimeric Ambiguous: 1,710 (0.00%)
 Unmapped: 2,157,481 (1.66%)
 Ligation Motif Present: 10,703 (0.01%)
Alignable (Normal+Chimeric Paired): 128,177,820 (98.34%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Inv4_Mut/aligned inter.txt
Intra-fragment Reads: 23,803,056 (18.26% / 56.70%)
Below MAPQ Threshold: 4,875,403 (3.74% / 11.61%)
Hi-C Contacts: 13,301,681 (10.21% / 31.69%)
 Ligation Motif Present: 4,107  (0.00% / 0.01%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 2,057,279  (1.58% / 4.90%)
Intra-chromosomal: 11,244,402  (8.63% / 26.79%)
Short Range (<20Kb): 6,906,564  (5.30% / 16.45%)
Long Range (>20Kb): 4,337,830  (3.33% / 10.33%)