Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/InvC_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  148,436,855
 Normal Paired: 142,377,431 (95.92%)
 Chimeric Paired: 3,149,835 (2.12%)
 Chimeric Ambiguous: 360,781 (0.24%)
 Unmapped: 2,548,808 (1.72%)
 Ligation Motif Present: 35,202 (0.02%)
Alignable (Normal+Chimeric Paired): 145,527,266 (98.04%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/InvC_Mut/aligned inter.txt
Intra-fragment Reads: 19,766,792 (13.32% / 50.18%)
Below MAPQ Threshold: 5,418,228 (3.65% / 13.75%)
Hi-C Contacts: 14,206,132 (9.57% / 36.06%)
 Ligation Motif Present: 9,111  (0.01% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 27% - 25% - 24% - 24%
Inter-chromosomal: 2,841,733  (1.91% / 7.21%)
Intra-chromosomal: 11,364,399  (7.66% / 28.85%)
Short Range (<20Kb): 6,671,067  (4.49% / 16.94%)
Long Range (>20Kb): 4,693,257  (3.16% / 11.91%)