Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/InvIntra -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  215,127,274
 Normal Paired: 211,385,995 (98.26%)
 Chimeric Paired: 7,927 (0.00%)
 Chimeric Ambiguous: 3,745 (0.00%)
 Unmapped: 3,729,607 (1.73%)
 Ligation Motif Present: 44,078 (0.02%)
Alignable (Normal+Chimeric Paired): 211,393,922 (98.26%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/InvIntra/aligned inter.txt
Intra-fragment Reads: 25,123,443 (11.68% / 46.60%)
Below MAPQ Threshold: 8,782,655 (4.08% / 16.29%)
Hi-C Contacts: 20,003,376 (9.30% / 37.11%)
 Ligation Motif Present: 9,431  (0.00% / 0.02%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 24% - 24% - 26%
Inter-chromosomal: 4,577,112  (2.13% / 8.49%)
Intra-chromosomal: 15,426,264  (7.17% / 28.62%)
Short Range (<20Kb): 9,035,126  (4.20% / 16.76%)
Long Range (>20Kb): 6,391,075  (2.97% / 11.86%)