rearrangement_ID path_to_processed_hic_data rearrangement_type cell_type capture_WT_raw_data capture_Mut_raw_data cite genome_assembly chr start_capture end_capture start1 end1 start2 end2 start3 end3 start4 end4 start5 end5 start6 end6 path_to_processed_CTCF_data CTCF_raw_data CTCF_input Kit30 ./hic_data/deletion/Kit30/ deletion mast_cell mm10 chr5 74130000 76415000 75852780.0 75881218.0 Kit30plus ./hic_data/deletion/Kit30plus/ deletion mast_cell mm10 chr5 74130000 76415000 75736367.0 757336679.0 75852780.0 75881218.0 Pdgfra_KO ./hic_data/deletion/Pdgfra_KO/ deletion mast_cell mm10 chr5 74130000 76415000 75155624.0 75852780.0 MusDelB ./hic_data/deletion/MusDelB/ deletion E11.5 distal limb buds SRR5099908 SRR5099909 "Bianco Simona et al. ""Polymer physics predicts the effects of structural variants on chromatin architecture."" Nature genetics 50.5 (2018): 662-667." mm10 chr1 70945000 81010000 76395828.0 78067689.0 DelBs ./hic_data/deletion/DelBs/ deletion E11.5 distal limb buds SRR5099908 SRR5099910 "Bianco Simona et al. ""Polymer physics predicts the effects of structural variants on chromatin architecture."" Nature genetics 50.5 (2018): 662-667." mm10 chr1 70945000 81010000 76395828.0 77865824.0 DelB ./hic_data/deletion/DelB/ deletion human fibroblasts SRX2416656 SRX2416657 "Bianco Simona et al. ""Polymer physics predicts the effects of structural variants on chromatin architecture."" Nature genetics 50.5 (2018): 662-667." hg38 chr2 217445000 223235000 220413511.0 222149613.0 Bor ./hic_data/deletion/Bor/ deletion E12.5 limb buds SRX1593831 SRX1593833 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 111522545.0 111540886.0 DelL-Mm ./hic_data/deletion/DelL-Mm/ deletion Forelimb E11.5 SRX3175632; SRX3175633; SRX3175634; SRX3175635 SRX3175656-SRX3175657 "Kragesteen Bjørt K. et al. ""Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis."" Nature genetics 50.10 (2018): 1463-1473." mm10 chr13 53895001 57200000 56048376.0 56147390.0 Neur1-Mm ./hic_data/deletion/Neur1-Mm/ deletion Forelimb E11.5 SRX3175632; SRX3175633; SRX3175634; SRX3175635 SRX3175662-SRX3175663 "Kragesteen Bjørt K. et al. ""Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis."" Nature genetics 50.10 (2018): 1463-1473." mm10 chr13 53895001 57200000 56219601.0 56264136.0 ZRSreg ./hic_data/deletion/ZRSreg/ deletion FLHL SRX5099269; SRX5099270; SRX5764173 SRX5764174; "Paliou Christina et al. ""Preformed chromatin topology assists transcriptional robustness of Shh during limb development."" Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399." mm10 chr5 27460000 30345000 29314818.0 29315227.0 Lprom ./hic_data/deletion/Lprom/ deletion FLHL SRX5099269; SRX5099270; SRX5764173 SRX5099268; SRX5764172 "Paliou Christina et al. ""Preformed chromatin topology assists transcriptional robustness of Shh during limb development."" Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399." mm10 chr5 27460000 30345000 FirreKO_1 ./hic_data/deletion/FirreKO_1/ deletion MEF female SRX3241571-SRX3241578 SRX3241579-SRX3241585 "Barutcu A. Rasim et al. ""A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus."" Nature communications 9.1 (2018): 1-11." mm10 chrX 50550000 50675000 50555286.0 50637116.0 FirreKO_2 ./hic_data/deletion/FirreKO_2/ deletion MEF male SRX3241586-SRX3241589 SRX3241590-SRX3241595 "Barutcu A. Rasim et al. ""A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus."" Nature communications 9.1 (2018): 1-11." mm10 chrX 50550000 50675000 50555286.0 50637116.0 FirreKO_3 ./hic_data/deletion/FirreKO_3/ deletion mESC male SRX3269798-SRX3269799 SRX3269796-SRX3269797 "Barutcu A. Rasim et al. ""A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus."" Nature communications 9.1 (2018): 1-11." mm10 chrX 50550000 50675000 50555286.0 50637116.0 del1-13d9lac_1 ./hic_data/deletion/del1-13d9lac_1/ deletion_2 Distal Forelimb E12 SRX3024410 SRX3024412 "Rodríguez-Carballo Eddie et al. ""The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes."" Genes & development 31.22 (2017): 2264-2281." mm10 chr2 70945000 81015000 74663890.0 74693921.0 74701834.0 74764314.0 del1-13d9lac_2 ./hic_data/deletion/del1-13d9lac_2/ deletion_2 Proximal Forelimb E12 SRX3024415 SRX3024413 "Rodríguez-Carballo Eddie et al. ""The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes."" Genes & development 31.22 (2017): 2264-2281." mm10 chr2 70945000 81015000 74663890.0 74693921.0 74701834.0 74764314.0 delattP-Rel5d9lac_1 ./hic_data/deletion/delattP-Rel5d9lac_1/ deletion_2 Distal Forelimb E12 SRX3024410 SRX3024414 "Rodríguez-Carballo Eddie et al. ""The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes."" Genes & development 31.22 (2017): 2264-2281." mm10 chr2 70945000 81015000 74422050.0 74693922.0 74701834.0 7468746.0 delattP-Rel5d9lac_2 ./hic_data/deletion/delattP-Rel5d9lac_2/ deletion_2 Proximal Forelimb E12 SRX3024415 SRX3024415 "Rodríguez-Carballo Eddie et al. ""The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes."" Genes & development 31.22 (2017): 2264-2281." mm10 chr2 70945000 81015000 74422050.0 74693922.0 74701834.0 7468746.0 BorC1 ./hic_data/deletion/BorC1/ deletion_2 E12.5 limb buds SRX1593831 SRX5260103 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 111904229.0 111904329.0 111522535.0 111540879.0 D3839 ./hic_data/deletion/D3839/ deletion_2 erythroid cells SRX2741786-SRX2741788; SRX2741771-SRX2741773; SRX2741762-SRX2741764 SRX2741789-SRX2741791; "Kragesteen Bjørt K. et al. ""Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis."" Nature genetics 50.10 (2018): 1463-1473." mm10 chr11 32190000 32335000 32238646.0 32238667.0 32237202.0 32237228.0 i4i5 ./hic_data/deletion/i4i5/ deletion_2 FLHL SRX5099269; SRX5099270; SRX5764173 SRX5099264; SRX5099265 "Paliou Christina et al. ""Preformed chromatin topology assists transcriptional robustness of Shh during limb development."" Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399." mm10 chr5 27465001 30345000 29293392.0 29293421.0 29336029.0 29336056.0 BorC1-2 ./hic_data/deletion/BorC1-2/ deletion_3 E12.5 limb buds SRX1593831 SRX5260104 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 112209542.0 112209642.0 111522535.0 111540879.0 111653006.0 111653106.0 i4i5ZRSreg ./hic_data/deletion/i4i5ZRSreg/ deletion_3 FLHL SRX5099269; SRX5099270; SRX5764173 SRX5764177; SRX5764178 "Paliou Christina et al. ""Preformed chromatin topology assists transcriptional robustness of Shh during limb development."" Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399." mm10 chr5 27460000 30345000 29293392.0 29293421.0 29336029.0 29336056.0 29314818.0 29315227.0 i4i5ZRS_1 ./hic_data/deletion/i4i5ZRS_1/ deletion_3 FLHL SRX5099269; SRX5099270; SRX5764173 SRX5099266; SRX5099267 "Paliou Christina et al. ""Preformed chromatin topology assists transcriptional robustness of Shh during limb development."" Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399." mm10 chr5 27460000 30345000 29293392.0 29293421.0 29336029.0 29336056.0 29314814.0 29314832.0 i4i5ZRS_2 ./hic_data/deletion/i4i5ZRS_2/ deletion_3 midbrain SRX5099272; SRX5099273 SRX5764175; SRX5764176 "Paliou Christina et al. ""Preformed chromatin topology assists transcriptional robustness of Shh during limb development."" Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399." mm10 chr5 27460000 30345000 29293392.0 29293421.0 29336029.0 29336056.0 29314814.0 29314832.0 BorC1-4 ./hic_data/deletion/BorC1-4/ deletion_5 E12.5 limb buds SRX1593831 SRX5260105 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 111522535.0 111540879.0 111514320.0 111653006.0 111653106.0 111904229.0 111904329.0 111964807.0 112103393.0 112103493.0 dup-S ./hic_data/duplication/dup-S/ duplication E12.5 limb buds SRX1593831 SRX1889696 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 111891303.0 112311622.0 dup-L ./hic_data/duplication/dup-L/ duplication E12.5 limb buds SRX1593831 SRX1593832 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 111098275.0 112653378.0 dup-C ./hic_data/duplication/dup-C/ duplication E12.5 limb buds SRX1593831 SRX1889695 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 110910796.0 112653378.0 Dup-LBor ./hic_data/duplication_deletion/Dup-LBor/ duplication_deletion E12.5 limb buds SRX1593831 SRX1593834 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 111098275.0 112653378.0 111522545.0 111540886.0 InvF ./hic_data/inversion/InvF/ inversion E11.5 distal limb buds SRR5099908 SRR5099911 "Bianco Simona et al. ""Polymer physics predicts the effects of structural variants on chromatin architecture."" Nature genetics 50.5 (2018): 662-667." mm10 chr1 70945000 81010000 74786262.0 75902132.0 Inv1 ./hic_data/inversion/Inv1/ inversion forelimb E11.5 SRX4369709 SRX4369710 "Kraft Katerina et al. ""Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations."" Nature cell biology 21.3 (2019): 305-310." mm10 chr1 70945000 81015000 75279391.0 75902131.0 Inv2 ./hic_data/inversion/Inv2/ inversion forelimb E11.5 SRX4369709 SRX4369711 "Kraft Katerina et al. ""Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations."" Nature cell biology 21.3 (2019): 305-310." mm10 chr1 70945000 81015000 75135035.0 75902131.0 Inv3 ./hic_data/inversion/Inv3/ inversion forelimb E11.5 SRX4369709 SRX4369712 "Kraft Katerina et al. ""Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations."" Nature cell biology 21.3 (2019): 305-310." mm10 chr1 70945000 81015000 74887741.0 75902131.0 Inv4 ./hic_data/inversion/Inv4/ inversion forelimb E11.5 SRX4369709 SRX4369713 "Kraft Katerina et al. ""Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations."" Nature cell biology 21.3 (2019): 305-310." mm10 chr1 70945000 81015000 7489655.0 78902131.0 Inv1d ./hic_data/inversion/Inv1d/ inversion forelimb E11.5 SRX4369709 SRX4369714 "Kraft Katerina et al. ""Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations."" Nature cell biology 21.3 (2019): 305-310." mm10 chr1 70945000 81015000 75650966.0 75655176.0 InvC ./hic_data/inversion/ InvC/ inversion E12.5 limb buds SRX1593831 SRX5260108 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 111522535.0 112653434.0 InvIntra ./hic_data/inversion/InvIntra/ inversion E12.5 limb buds SRX1593831 SRX5260109 "Franke Martin et al. ""Formation of new chromatin domains determines pathogenicity of genomic duplications."" Nature 538.7624 (2016): 265-269." mm10 chr11 109140001 115015000 111540879.0 112653434.0 Inv1-Mm_1 ./hic_data/inversion/Inv1-Mm_1/ inversion Hindlimb E11.5 SRX3175636; SRX3175637; SRX3175638; SRX3175639; SRX3542185; SRX4112993 "Kragesteen Bjørt K. et al. ""Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis."" Nature genetics 50.10 (2018): 1463-1473." mm10 chr13 53895001 57200000 56048376.0 56160753.0 Inv1-Mm_2 ./hic_data/inversion/Inv1-Mm_2/ inversion Forelimb E11.5 SRX3175632; SRX3175633; SRX3175634; SRX3175635 SRX3175654-SRX3175655 "Kragesteen Bjørt K. et al. ""Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis."" Nature genetics 50.10 (2018): 1463-1473." mm10 chr13 53895001 57200000 56048376.0 56160753.0