Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/CTCF_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  111,648,885
 Normal Paired: 104,405,723 (93.51%)
 Chimeric Paired: 4,745,060 (4.25%)
 Chimeric Ambiguous: 751,577 (0.67%)
 Unmapped: 1,746,525 (1.56%)
 Ligation Motif Present: 29,627 (0.03%)
Alignable (Normal+Chimeric Paired): 109,150,783 (97.76%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/CTCF_Mut/aligned inter.txt
Intra-fragment Reads: 27,090,095 (24.26% / 52.81%)
Below MAPQ Threshold: 5,914,508 (5.30% / 11.53%)
Hi-C Contacts: 18,293,201 (16.38% / 35.66%)
 Ligation Motif Present: 12,211  (0.01% / 0.02%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 24% - 24% - 26%
Inter-chromosomal: 3,314,752  (2.97% / 6.46%)
Intra-chromosomal: 14,978,449  (13.42% / 29.20%)
Short Range (<20Kb): 9,705,776  (8.69% / 18.92%)
Long Range (>20Kb): 5,272,650  (4.72% / 10.28%)