Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/ckit/54 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/ckit/54 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  420,294
 Normal Paired: 206,180 (49.06%)
 Chimeric Paired: 78,414 (18.66%)
 Chimeric Ambiguous: 33,088 (7.87%)
 Unmapped: 102,612 (24.41%)
 Ligation Motif Present: 260,505 (61.98%)
Alignable (Normal+Chimeric Paired): 284,594 (67.71%)
Unique Reads: 283,195 (67.38%)
PCR Duplicates: 1,223 (0.29%)
Optical Duplicates: 176 (0.04%)
Library Complexity Estimate: 32,976,916
Intra-fragment Reads: 18,312 (4.36% / 6.47%)
Below MAPQ Threshold: 33,526 (7.98% / 11.84%)
Hi-C Contacts: 231,357 (55.05% / 81.70%)
 Ligation Motif Present: 173,925  (41.38% / 61.42%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 34,708  (8.26% / 12.26%)
Intra-chromosomal: 196,649  (46.79% / 69.44%)
Short Range (<20Kb): 150,307  (35.76% / 53.08%)
Long Range (>20Kb): 46,342  (11.03% / 16.36%)