Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/ckit/54 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/ckit/54 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  420,294
 Normal Paired: 206,180 (49.06%)
 Chimeric Paired: 78,414 (18.66%)
 Chimeric Ambiguous: 33,088 (7.87%)
 Unmapped: 102,612 (24.41%)
 Ligation Motif Present: 260,505 (61.98%)
Alignable (Normal+Chimeric Paired): 284,594 (67.71%)
Unique Reads: 283,195 (67.38%)
PCR Duplicates: 1,223 (0.29%)
Optical Duplicates: 176 (0.04%)
Library Complexity Estimate: 32,976,916
Intra-fragment Reads: 18,312 (4.36% / 6.47%)
Below MAPQ Threshold: 47,999 (11.42% / 16.95%)
Hi-C Contacts: 216,884 (51.60% / 76.58%)
 Ligation Motif Present: 164,551  (39.15% / 58.11%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 30,733  (7.31% / 10.85%)
Intra-chromosomal: 186,151  (44.29% / 65.73%)
Short Range (<20Kb): 143,754  (34.20% / 50.76%)
Long Range (>20Kb): 42,397  (10.09% / 14.97%)