Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -d /mnt/storage/home/asryzhkova/scratch/fastq/capture_fibr_kit30 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU -t 4 -o /mnt/storage/home/asryzhkova/scratch/hic/Vertebrates/mm10 -n mm10 -q 30 Sequenced Read Pairs: 58,518,376 Normal Paired: 22,594,714 (38.61%) Chimeric Paired: 28,895,879 (49.38%) Chimeric Ambiguous: 6,593,744 (11.27%) Unmapped: 434,039 (0.74%) Ligation Motif Present: 54,915,050 (93.84%) Alignable (Normal+Chimeric Paired): 51,490,593 (87.99%) Unique Reads: 45,445,985 (77.66%) PCR Duplicates: 6,044,608 (10.33%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 201,787,433 Intra-fragment Reads: 635,836 (1.09% / 1.40%) Below MAPQ Threshold: 4,634,189 (7.92% / 10.20%) Hi-C Contacts: 40,175,960 (68.66% / 88.40%) Ligation Motif Present: 32,393,740 (55.36% / 71.28%) 3' Bias (Long Range): 85% - 15% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 15,202,892 (25.98% / 33.45%) Intra-chromosomal: 24,973,068 (42.68% / 54.95%) Short Range (<20Kb): 16,104,274 (27.52% / 35.44%) Long Range (>20Kb): 8,868,788 (15.16% / 19.52%)