Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n Fibs_dKO-2 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapF/CapF-4 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/CapF-4 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  38,056,012
 Normal Paired: 15,804,448 (41.53%)
 Chimeric Paired: 17,387,734 (45.69%)
 Chimeric Ambiguous: 4,444,732 (11.68%)
 Unmapped: 419,098 (1.10%)
 Ligation Motif Present: 30,746,850 (80.79%)
Alignable (Normal+Chimeric Paired): 33,192,182 (87.22%)
Unique Reads: 24,751,822 (65.04%)
PCR Duplicates: 633,610 (1.66%)
Optical Duplicates: 7,806,750 (20.51%)
Library Complexity Estimate: 500,033,120
Intra-fragment Reads: 776,505 (2.04% / 3.14%)
Below MAPQ Threshold: 2,726,689 (7.16% / 11.02%)
Hi-C Contacts: 21,248,628 (55.84% / 85.85%)
 Ligation Motif Present: 12,234,220  (32.15% / 49.43%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,708,278  (22.88% / 35.18%)
Intra-chromosomal: 12,540,350  (32.95% / 50.66%)
Short Range (<20Kb): 5,527,839  (14.53% / 22.33%)
Long Range (>20Kb): 7,012,484  (18.43% / 28.33%)