Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapF-5 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapF/CapF-5 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/CapF-5 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  43,289,301
 Normal Paired: 21,763,454 (50.27%)
 Chimeric Paired: 16,595,941 (38.34%)
 Chimeric Ambiguous: 4,504,561 (10.41%)
 Unmapped: 425,345 (0.98%)
 Ligation Motif Present: 35,646,754 (82.35%)
Alignable (Normal+Chimeric Paired): 38,359,395 (88.61%)
Unique Reads: 27,617,580 (63.80%)
PCR Duplicates: 1,218,269 (2.81%)
Optical Duplicates: 9,523,546 (22.00%)
Library Complexity Estimate: 331,584,229
Intra-fragment Reads: 703,896 (1.63% / 2.55%)
Below MAPQ Threshold: 2,852,261 (6.59% / 10.33%)
Hi-C Contacts: 24,061,423 (55.58% / 87.12%)
 Ligation Motif Present: 15,273,454  (35.28% / 55.30%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,722,133  (13.22% / 20.72%)
Intra-chromosomal: 18,339,290  (42.36% / 66.40%)
Short Range (<20Kb): 9,396,843  (21.71% / 34.02%)
Long Range (>20Kb): 8,942,400  (20.66% / 32.38%)