Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapF-5 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapF/CapF-5 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/CapF-5 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  43,289,301
 Normal Paired: 21,763,454 (50.27%)
 Chimeric Paired: 16,595,941 (38.34%)
 Chimeric Ambiguous: 4,504,561 (10.41%)
 Unmapped: 425,345 (0.98%)
 Ligation Motif Present: 35,646,754 (82.35%)
Alignable (Normal+Chimeric Paired): 38,359,395 (88.61%)
Unique Reads: 27,617,580 (63.80%)
PCR Duplicates: 1,218,269 (2.81%)
Optical Duplicates: 9,523,546 (22.00%)
Library Complexity Estimate: 331,584,229
Intra-fragment Reads: 703,896 (1.63% / 2.55%)
Below MAPQ Threshold: 4,095,362 (9.46% / 14.83%)
Hi-C Contacts: 22,818,322 (52.71% / 82.62%)
 Ligation Motif Present: 14,601,113  (33.73% / 52.87%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,241,839  (12.11% / 18.98%)
Intra-chromosomal: 17,576,483  (40.60% / 63.64%)
Short Range (<20Kb): 9,144,495  (21.12% / 33.11%)
Long Range (>20Kb): 8,431,942  (19.48% / 30.53%)