Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapF-6 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapF/CapF-6 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/CapF-6 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  52,721,041
 Normal Paired: 30,007,012 (56.92%)
 Chimeric Paired: 17,514,109 (33.22%)
 Chimeric Ambiguous: 4,705,454 (8.93%)
 Unmapped: 494,466 (0.94%)
 Ligation Motif Present: 40,163,746 (76.18%)
Alignable (Normal+Chimeric Paired): 47,521,121 (90.14%)
Unique Reads: 32,319,571 (61.30%)
PCR Duplicates: 2,491,487 (4.73%)
Optical Duplicates: 12,710,063 (24.11%)
Library Complexity Estimate: 231,442,410
Intra-fragment Reads: 1,483,257 (2.81% / 4.59%)
Below MAPQ Threshold: 3,544,019 (6.72% / 10.97%)
Hi-C Contacts: 27,292,295 (51.77% / 84.45%)
 Ligation Motif Present: 16,894,683  (32.05% / 52.27%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,543,231  (12.41% / 20.25%)
Intra-chromosomal: 20,749,064  (39.36% / 64.20%)
Short Range (<20Kb): 12,986,373  (24.63% / 40.18%)
Long Range (>20Kb): 7,762,661  (14.72% / 24.02%)