Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -S merge -n Fibs_dLeft -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapF/CapF-5 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/Fibs_dLeft -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  96,010,342
 Normal Paired: 51,770,466 (53.92%)
 Chimeric Paired: 34,110,050 (35.53%)
 Chimeric Ambiguous: 9,210,015 (9.59%)
 Unmapped: 919,811 (0.96%)
 Ligation Motif Present: 75,810,500 (78.96%)
Alignable (Normal+Chimeric Paired): 85,880,516 (89.45%)
Unique Reads: 58,212,694 (60.63%)
PCR Duplicates: 4,836,191 (5.04%)
Optical Duplicates: 22,831,631 (23.78%)
Library Complexity Estimate: 389,684,096
Intra-fragment Reads: 2,139,243 (2.23% / 3.67%)
Below MAPQ Threshold: 6,342,235 (6.61% / 10.89%)
Hi-C Contacts: 49,731,216 (51.80% / 85.43%)
 Ligation Motif Present: 30,945,527  (32.23% / 53.16%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,259,112  (12.77% / 21.06%)
Intra-chromosomal: 37,472,104  (39.03% / 64.37%)
Short Range (<20Kb): 20,770,739  (21.63% / 35.68%)
Long Range (>20Kb): 16,701,288  (17.40% / 28.69%)