Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 9 -q 30 -n Mast_Kit30+ -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/Cap/Kit30+ -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/Kit30+ -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  60,360,303
 Normal Paired: 34,997,148 (57.98%)
 Chimeric Paired: 16,353,064 (27.09%)
 Chimeric Ambiguous: 6,460,144 (10.70%)
 Unmapped: 2,549,947 (4.22%)
 Ligation Motif Present: 23,906,795 (39.61%)
Alignable (Normal+Chimeric Paired): 51,350,212 (85.07%)
Unique Reads: 45,739,844 (75.78%)
PCR Duplicates: 5,424,000 (8.99%)
Optical Duplicates: 186,368 (0.31%)
Library Complexity Estimate: 223,936,450
Intra-fragment Reads: 6,597,962 (10.93% / 14.42%)
Below MAPQ Threshold: 6,601,309 (10.94% / 14.43%)
Hi-C Contacts: 32,540,573 (53.91% / 71.14%)
 Ligation Motif Present: 10,846,525  (17.97% / 23.71%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,943,977  (16.47% / 21.74%)
Intra-chromosomal: 22,596,596  (37.44% / 49.40%)
Short Range (<20Kb): 7,193,083  (11.92% / 15.73%)
Long Range (>20Kb): 15,403,498  (25.52% / 33.68%)