Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapM-1 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapM/CapM-1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/CapM-1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  17,591,355
 Normal Paired: 13,052,044 (74.20%)
 Chimeric Paired: 3,483,515 (19.80%)
 Chimeric Ambiguous: 820,468 (4.66%)
 Unmapped: 235,328 (1.34%)
 Ligation Motif Present: 150,931 (0.86%)
Alignable (Normal+Chimeric Paired): 16,535,559 (94.00%)
Unique Reads: 13,236,998 (75.25%)
PCR Duplicates: 417,209 (2.37%)
Optical Duplicates: 2,881,352 (16.38%)
Library Complexity Estimate: 218,859,054
Intra-fragment Reads: 5,909,010 (33.59% / 44.64%)
Below MAPQ Threshold: 1,274,704 (7.25% / 9.63%)
Hi-C Contacts: 6,053,284 (34.41% / 45.73%)
 Ligation Motif Present: 66,391  (0.38% / 0.50%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,732,829  (9.85% / 13.09%)
Intra-chromosomal: 4,320,455  (24.56% / 32.64%)
Short Range (<20Kb): 2,628,645  (14.94% / 19.86%)
Long Range (>20Kb): 1,691,807  (9.62% / 12.78%)