Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapM-2 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapM/CapM-2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/CapM-2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  18,228,838
 Normal Paired: 12,098,129 (66.37%)
 Chimeric Paired: 4,748,772 (26.05%)
 Chimeric Ambiguous: 1,159,490 (6.36%)
 Unmapped: 222,447 (1.22%)
 Ligation Motif Present: 184,906 (1.01%)
Alignable (Normal+Chimeric Paired): 16,846,901 (92.42%)
Unique Reads: 13,643,044 (74.84%)
PCR Duplicates: 315,740 (1.73%)
Optical Duplicates: 2,888,117 (15.84%)
Library Complexity Estimate: 303,886,437
Intra-fragment Reads: 4,712,098 (25.85% / 34.54%)
Below MAPQ Threshold: 1,470,353 (8.07% / 10.78%)
Hi-C Contacts: 7,460,593 (40.93% / 54.68%)
 Ligation Motif Present: 80,314  (0.44% / 0.59%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,325,663  (12.76% / 17.05%)
Intra-chromosomal: 5,134,930  (28.17% / 37.64%)
Short Range (<20Kb): 2,768,729  (15.19% / 20.29%)
Long Range (>20Kb): 2,366,200  (12.98% / 17.34%)