Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 9 -q 30 -n Mast_WT -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/Cap/WT -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/WT -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  70,719,137
 Normal Paired: 45,723,863 (64.66%)
 Chimeric Paired: 17,552,416 (24.82%)
 Chimeric Ambiguous: 5,334,378 (7.54%)
 Unmapped: 2,108,480 (2.98%)
 Ligation Motif Present: 16,602,765 (23.48%)
Alignable (Normal+Chimeric Paired): 63,276,279 (89.48%)
Unique Reads: 50,873,364 (71.94%)
PCR Duplicates: 6,565,712 (9.28%)
Optical Duplicates: 5,837,203 (8.25%)
Library Complexity Estimate: 231,713,052
Intra-fragment Reads: 13,449,616 (19.02% / 26.44%)
Below MAPQ Threshold: 5,123,847 (7.25% / 10.07%)
Hi-C Contacts: 32,299,901 (45.67% / 63.49%)
 Ligation Motif Present: 7,476,609  (10.57% / 14.70%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,074,596  (19.90% / 27.67%)
Intra-chromosomal: 18,225,305  (25.77% / 35.82%)
Short Range (<20Kb): 8,183,638  (11.57% / 16.09%)
Long Range (>20Kb): 10,041,659  (14.20% / 19.74%)