Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n Mela_d30 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapM/CapM-5 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/CapM-5 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  44,829,458
 Normal Paired: 21,132,716 (47.14%)
 Chimeric Paired: 18,748,217 (41.82%)
 Chimeric Ambiguous: 4,408,697 (9.83%)
 Unmapped: 539,828 (1.20%)
 Ligation Motif Present: 16,484,564 (36.77%)
Alignable (Normal+Chimeric Paired): 39,880,933 (88.96%)
Unique Reads: 31,890,711 (71.14%)
PCR Duplicates: 990,036 (2.21%)
Optical Duplicates: 7,000,186 (15.62%)
Library Complexity Estimate: 534,996,075
Intra-fragment Reads: 2,753,062 (6.14% / 8.63%)
Below MAPQ Threshold: 3,005,189 (6.70% / 9.42%)
Hi-C Contacts: 26,132,460 (58.29% / 81.94%)
 Ligation Motif Present: 7,118,410  (15.88% / 22.32%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,747,099  (15.05% / 21.16%)
Intra-chromosomal: 19,385,361  (43.24% / 60.79%)
Short Range (<20Kb): 6,556,902  (14.63% / 20.56%)
Long Range (>20Kb): 12,828,442  (28.62% / 40.23%)