Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/AH/AH20 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/AH/AH20 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  100,200
 Normal Paired: 46,564 (46.47%)
 Chimeric Paired: 38,574 (38.50%)
 Chimeric Ambiguous: 12,675 (12.65%)
 Unmapped: 2,387 (2.38%)
 Ligation Motif Present: 72,574 (72.43%)
Alignable (Normal+Chimeric Paired): 85,138 (84.97%)
Unique Reads: 75,246 (75.10%)
PCR Duplicates: 9,257 (9.24%)
Optical Duplicates: 635 (0.63%)
Library Complexity Estimate: 356,980
Intra-fragment Reads: 3,649 (3.64% / 4.85%)
Below MAPQ Threshold: 11,529 (11.51% / 15.32%)
Hi-C Contacts: 60,068 (59.95% / 79.83%)
 Ligation Motif Present: 31,916  (31.85% / 42.42%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 38,740  (38.66% / 51.48%)
Intra-chromosomal: 21,328  (21.29% / 28.34%)
Short Range (<20Kb): 19,022  (18.98% / 25.28%)
Long Range (>20Kb): 2,306  (2.30% / 3.06%)