Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/AH/AH21 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/AH/AH21 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  95,652
 Normal Paired: 39,248 (41.03%)
 Chimeric Paired: 38,635 (40.39%)
 Chimeric Ambiguous: 15,520 (16.23%)
 Unmapped: 2,249 (2.35%)
 Ligation Motif Present: 76,433 (79.91%)
Alignable (Normal+Chimeric Paired): 77,883 (81.42%)
Unique Reads: 70,558 (73.77%)
PCR Duplicates: 6,782 (7.09%)
Optical Duplicates: 543 (0.57%)
Library Complexity Estimate: 414,806
Intra-fragment Reads: 2,255 (2.36% / 3.20%)
Below MAPQ Threshold: 10,067 (10.52% / 14.27%)
Hi-C Contacts: 58,236 (60.88% / 82.54%)
 Ligation Motif Present: 33,881  (35.42% / 48.02%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 31,206  (32.62% / 44.23%)
Intra-chromosomal: 27,030  (28.26% / 38.31%)
Short Range (<20Kb): 15,195  (15.89% / 21.54%)
Long Range (>20Kb): 11,835  (12.37% / 16.77%)