Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/AH/AH23 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/AH/AH23 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  102,466
 Normal Paired: 41,457 (40.46%)
 Chimeric Paired: 41,769 (40.76%)
 Chimeric Ambiguous: 17,166 (16.75%)
 Unmapped: 2,074 (2.02%)
 Ligation Motif Present: 81,717 (79.75%)
Alignable (Normal+Chimeric Paired): 83,226 (81.22%)
Unique Reads: 74,184 (72.40%)
PCR Duplicates: 8,450 (8.25%)
Optical Duplicates: 592 (0.58%)
Library Complexity Estimate: 376,004
Intra-fragment Reads: 3,469 (3.39% / 4.68%)
Below MAPQ Threshold: 11,369 (11.10% / 15.33%)
Hi-C Contacts: 59,346 (57.92% / 80.00%)
 Ligation Motif Present: 35,014  (34.17% / 47.20%)
 3' Bias (Long Range): 84% - 16%
 Pair Type %(L-I-O-R): 26% - 25% - 26% - 23%
Inter-chromosomal: 39,509  (38.56% / 53.26%)
Intra-chromosomal: 19,837  (19.36% / 26.74%)
Short Range (<20Kb): 17,509  (17.09% / 23.60%)
Long Range (>20Kb): 2,328  (2.27% / 3.14%)