Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/AH/AH25 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/AH/AH25 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  107,256
 Normal Paired: 63,385 (59.10%)
 Chimeric Paired: 28,141 (26.24%)
 Chimeric Ambiguous: 14,432 (13.46%)
 Unmapped: 1,298 (1.21%)
 Ligation Motif Present: 65,334 (60.91%)
Alignable (Normal+Chimeric Paired): 91,526 (85.33%)
Unique Reads: 80,791 (75.33%)
PCR Duplicates: 10,040 (9.36%)
Optical Duplicates: 695 (0.65%)
Library Complexity Estimate: 379,999
Intra-fragment Reads: 11,792 (10.99% / 14.60%)
Below MAPQ Threshold: 10,741 (10.01% / 13.29%)
Hi-C Contacts: 58,258 (54.32% / 72.11%)
 Ligation Motif Present: 30,567  (28.50% / 37.83%)
 3' Bias (Long Range): 64% - 36%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 15,973  (14.89% / 19.77%)
Intra-chromosomal: 42,285  (39.42% / 52.34%)
Short Range (<20Kb): 28,373  (26.45% / 35.12%)
Long Range (>20Kb): 13,911  (12.97% / 17.22%)