Experiment description: Juicer version 1.5.6;12 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 12 -d /mnt/storage/home/manuriddinov/scratch/fastq/Mlig3/P2 -p /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3R.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3R.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3R.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/P2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  2,808,200
 Normal Paired: 1,542,474 (54.93%)
 Chimeric Paired: 565,671 (20.14%)
 Chimeric Ambiguous: 567,218 (20.20%)
 Unmapped: 132,837 (4.73%)
 Ligation Motif Present: 1,437,071 (51.17%)
Alignable (Normal+Chimeric Paired): 2,108,145 (75.07%)
Unique Reads: 1,854,838 (66.05%)
PCR Duplicates: 231,966 (8.26%)
Optical Duplicates: 21,341 (0.76%)
Library Complexity Estimate: 8,677,300
Intra-fragment Reads: 226,163 (8.05% / 12.19%)
Below MAPQ Threshold: 975,933 (34.75% / 52.62%)
Hi-C Contacts: 652,742 (23.24% / 35.19%)
 Ligation Motif Present: 278,101  (9.90% / 14.99%)
 3' Bias (Long Range): 63% - 37%
 Pair Type %(L-I-O-R): 19% - 31% - 31% - 19%
Inter-chromosomal: 400,404  (14.26% / 21.59%)
Intra-chromosomal: 252,338  (8.99% / 13.60%)
Short Range (<20Kb): 234,354  (8.35% / 12.63%)
Long Range (>20Kb): 17,981  (0.64% / 0.97%)