Experiment description: Juicer version 1.5.6;12 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 12 -d /mnt/storage/home/manuriddinov/scratch/fastq/Mlig3/M -p /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3R.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3R.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3R.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Mlig3/MR -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  285,530,717
 Normal Paired: 174,999,765 (61.29%)
 Chimeric Paired: 43,366,270 (15.19%)
 Chimeric Ambiguous: 39,544,422 (13.85%)
 Unmapped: 27,620,260 (9.67%)
 Ligation Motif Present: 141,529,858 (49.57%)
Alignable (Normal+Chimeric Paired): 218,366,035 (76.48%)
Unique Reads: 203,496,177 (71.27%)
PCR Duplicates: 14,557,957 (5.10%)
Optical Duplicates: 311,901 (0.11%)
Library Complexity Estimate: 1,559,521,627
Intra-fragment Reads: 6,428,983 (2.25% / 3.16%)
Below MAPQ Threshold: 126,789,746 (44.40% / 62.31%)
Hi-C Contacts: 70,277,448 (24.61% / 34.54%)
 Ligation Motif Present: 29,412,566  (10.30% / 14.45%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 26% - 25% - 24%
Inter-chromosomal: 42,243,835  (14.79% / 20.76%)
Intra-chromosomal: 28,033,613  (9.82% / 13.78%)
Short Range (<20Kb): 20,754,862  (7.27% / 10.20%)
Long Range (>20Kb): 7,278,645  (2.55% / 3.58%)