Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Mlig3/MA -p /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Mlig3/MA -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  4,962,643
 Normal Paired: 2,845,041 (57.33%)
 Chimeric Paired: 572,963 (11.55%)
 Chimeric Ambiguous: 837,147 (16.87%)
 Unmapped: 707,492 (14.26%)
 Ligation Motif Present: 2,248,332 (45.31%)
Alignable (Normal+Chimeric Paired): 3,418,004 (68.87%)
Unique Reads: 3,366,427 (67.84%)
PCR Duplicates: 48,300 (0.97%)
Optical Duplicates: 3,277 (0.07%)
Library Complexity Estimate: 119,566,719
Intra-fragment Reads: 64,405 (1.30% / 1.91%)
Below MAPQ Threshold: 2,637,387 (53.14% / 78.34%)
Hi-C Contacts: 664,635 (13.39% / 19.74%)
 Ligation Motif Present: 277,062  (5.58% / 8.23%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 390,136  (7.86% / 11.59%)
Intra-chromosomal: 274,499  (5.53% / 8.15%)
Short Range (<20Kb): 223,628  (4.51% / 6.64%)
Long Range (>20Kb): 50,871  (1.03% / 1.51%)