Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Mlig3/MD -p /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Mlig3/MD -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  4,070,886
 Normal Paired: 2,462,899 (60.50%)
 Chimeric Paired: 445,116 (10.93%)
 Chimeric Ambiguous: 603,396 (14.82%)
 Unmapped: 559,475 (13.74%)
 Ligation Motif Present: 1,616,023 (39.70%)
Alignable (Normal+Chimeric Paired): 2,908,015 (71.43%)
Unique Reads: 2,852,352 (70.07%)
PCR Duplicates: 52,542 (1.29%)
Optical Duplicates: 3,121 (0.08%)
Library Complexity Estimate: 79,330,314
Intra-fragment Reads: 130,185 (3.20% / 4.56%)
Below MAPQ Threshold: 2,173,464 (53.39% / 76.20%)
Hi-C Contacts: 548,703 (13.48% / 19.24%)
 Ligation Motif Present: 200,341  (4.92% / 7.02%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 310,907  (7.64% / 10.90%)
Intra-chromosomal: 237,796  (5.84% / 8.34%)
Short Range (<20Kb): 208,411  (5.12% / 7.31%)
Long Range (>20Kb): 29,385  (0.72% / 1.03%)