Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10/ -D /mnt/storage/home/aselsukova/juicer -d /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A7 -s DpnII -p /mnt/storage/home/aselsukova/juicer/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/juicer/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/juicer/scratch/juicer_scratch/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  35,176,062
 Normal Paired: 18,468,682 (52.50%)
 Chimeric Paired: 11,105,001 (31.57%)
 Chimeric Ambiguous: 3,624,321 (10.30%)
 Unmapped: 1,978,058 (5.62%)
 Ligation Motif Present: 17,551,054 (49.89%)
Alignable (Normal+Chimeric Paired): 29,573,683 (84.07%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A7/aligned inter.txt
Intra-fragment Reads: 1,864,052 (5.30% / 6.84%)
Below MAPQ Threshold: 4,092,368 (11.63% / 15.02%)
Hi-C Contacts: 21,282,247 (60.50% / 78.13%)
 Ligation Motif Present: 11,107,392  (31.58% / 40.78%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,538,238  (18.59% / 24.00%)
Intra-chromosomal: 14,744,009  (41.91% / 54.13%)
Short Range (<20Kb): 4,255,692  (12.10% / 15.62%)
Long Range (>20Kb): 10,488,306  (29.82% / 38.51%)