Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10/ -D /mnt/storage/home/aselsukova/juicer -d /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A4 -s DpnII -p /mnt/storage/home/aselsukova/juicer/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/juicer/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/juicer/scratch/juicer_scratch/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  30,697,793
 Normal Paired: 15,321,514 (49.91%)
 Chimeric Paired: 10,465,380 (34.09%)
 Chimeric Ambiguous: 3,118,107 (10.16%)
 Unmapped: 1,792,792 (5.84%)
 Ligation Motif Present: 16,358,687 (53.29%)
Alignable (Normal+Chimeric Paired): 25,786,894 (84.00%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A4/aligned inter.txt
Intra-fragment Reads: 944,890 (3.08% / 3.97%)
Below MAPQ Threshold: 3,620,390 (11.79% / 15.22%)
Hi-C Contacts: 19,224,771 (62.63% / 80.81%)
 Ligation Motif Present: 10,454,717  (34.06% / 43.95%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,350,624  (27.20% / 35.10%)
Intra-chromosomal: 10,874,147  (35.42% / 45.71%)
Short Range (<20Kb): 3,473,024  (11.31% / 14.60%)
Long Range (>20Kb): 7,401,122  (24.11% / 31.11%)