Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10/ -D /mnt/storage/home/aselsukova/juicer -d /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A6 -s DpnII -p /mnt/storage/home/aselsukova/juicer/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/juicer/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/juicer/scratch/juicer_scratch/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  11,777,055
 Normal Paired: 7,907,958 (67.15%)
 Chimeric Paired: 2,890,292 (24.54%)
 Chimeric Ambiguous: 598,472 (5.08%)
 Unmapped: 380,333 (3.23%)
 Ligation Motif Present: 337,873 (2.87%)
Alignable (Normal+Chimeric Paired): 10,798,250 (91.69%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A6/aligned inter.txt
Intra-fragment Reads: 3,086,629 (26.21% / 33.24%)
Below MAPQ Threshold: 1,167,013 (9.91% / 12.57%)
Hi-C Contacts: 5,031,198 (42.72% / 54.19%)
 Ligation Motif Present: 211,503  (1.80% / 2.28%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,676,155  (14.23% / 18.05%)
Intra-chromosomal: 3,355,043  (28.49% / 36.13%)
Short Range (<20Kb): 1,947,153  (16.53% / 20.97%)
Long Range (>20Kb): 1,407,889  (11.95% / 15.16%)