Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10/ -D /mnt/storage/home/aselsukova/juicer -d /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A16 -s DpnII -p /mnt/storage/home/aselsukova/juicer/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/juicer/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/juicer/scratch/juicer_scratch/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  25,723,821
 Normal Paired: 13,366,486 (51.96%)
 Chimeric Paired: 8,182,313 (31.81%)
 Chimeric Ambiguous: 2,565,188 (9.97%)
 Unmapped: 1,609,834 (6.26%)
 Ligation Motif Present: 14,389,702 (55.94%)
Alignable (Normal+Chimeric Paired): 21,548,799 (83.77%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A16/aligned inter.txt
Intra-fragment Reads: 1,174,677 (4.57% / 5.90%)
Below MAPQ Threshold: 3,391,084 (13.18% / 17.04%)
Hi-C Contacts: 15,331,116 (59.60% / 77.05%)
 Ligation Motif Present: 9,126,812  (35.48% / 45.87%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,578,268  (33.35% / 43.11%)
Intra-chromosomal: 6,752,848  (26.25% / 33.94%)
Short Range (<20Kb): 2,585,698  (10.05% / 13.00%)
Long Range (>20Kb): 4,167,149  (16.20% / 20.94%)